CDS

Accession Number TCMCG017C28935
gbkey CDS
Protein Id OMO65093.1
Location complement(join(198651..199097,199680..200132,200219..200389,200490..200674,200961..202458))
GeneID InterPro:IPR003107
Organism Corchorus olitorius
locus_tag COLO4_31569

Protein

Length 917aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01020860.1
Definition RNA-processing protein, HAT helix [Corchorus olitorius]
Locus_tag COLO4_31569

EGGNOG-MAPPER Annotation

COG_category A
Description Pre-mRNA-splicing factor
KEGG_TC -
KEGG_Module M00355        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12867        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000349        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000393        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0000974        [VIEW IN EMBL-EBI]
GO:0001701        [VIEW IN EMBL-EBI]
GO:0001824        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0005684        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006283        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006351        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009790        [VIEW IN EMBL-EBI]
GO:0009792        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0022607        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0022618        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032774        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034622        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0043009        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0065003        [VIEW IN EMBL-EBI]
GO:0071007        [VIEW IN EMBL-EBI]
GO:0071010        [VIEW IN EMBL-EBI]
GO:0071012        [VIEW IN EMBL-EBI]
GO:0071013        [VIEW IN EMBL-EBI]
GO:0071014        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071826        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097659        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCGCTACCGAAGGAGCTATACCCTTCCCAGGATGATCTTCTCTATGAAGAAGAACTCTTAAGGAACCCCTTTAGTTTGAAACTTTGGTGGAGGTATCTTATAGCTAGATCAGAGGCTCCTTTTAAGAAAAGGTTTATAATTTATGAGCGAGCTCTGAAAGCTTTACCAGGTAGTTATAAGTTATGGCATGCTTATTTACGTGAACGCCTCGAAATTGTTCGGAATTTGCCTGTGACTCACCCTCAATATGAAACCCTTAATAATACCTTTGAGAGAGCTCTTGTTACAATGCATAAGATGCCTAGGATTTGGATAATGTACTTGACGACGTTAACTGAACAGAAGTTGATTACCAAGACTCGTAGGACGTTTGATAGGGCTCTTTGTGCATTGCCTGTAACTCAACATGATAGAATTTGGGAGCCGTATTTGGTTTTTGTGAGTCAGAAGGGTATCCCCATTGAGACATCACTCAGGGTTTATAGGAGGTATTTGAAGTATGATCCTAGTCATATTGAGGATTTTATTGAGTTTTTGTTGAATTCAAGTCTGTGGCAAGAAGCAGCGGAGAGGCTAGCATCTGTTTTGAATGATGATCAGTTTTATTCAATAAAGGGTAAAACTAAGCATAGGTTGTGGCTGGAGTTGTGTGACTTGCTGACAACTCATGCCACTGAGGTTTCAGGGCTCAATGTGGATGCCATAATTAGGGGTGGGATTAGGAAGTTTACAGATGAAGTTGGGAGGCTTTGGACTTCGCTTGCTGATTATTATATCAGAAGAGAACTGTTTGAGAAAGCCAGGGATATTTTTGAGGAGGGAATGGCAACAGTGGTTACTGTGAGGGATTTCAGTGTCATATTTGATGCTTATTCACAATTCGAAGAGAGTATGGTGGCTATCAAGATGGAGAGCTTAGATTTGAGCGATGAAGAAGAAAATGATGGTGTGGAGGAGGATGAAGATGAAGAAGACATCCGTTTGGACATTCGTCTGTGCAAGTCAAAGTCCAAGTTTGAGAAGAAGATATTTAAGGGGTTTTGGTTACATGACGAGAATGATGTGGATTTGAGGTTGGCTCGGTTAGAGCATTTGATGAATAGAAGGCCAGAACTGGCTAATAGTGTTCTTTTACGCCAGAATCCACATAATGTGGAGCAATGGCACCGTAGGGTCAAGTTGTTTGAGGGGAATCCCACCAAACAGATATTAACCTACACAGAAGCAGTTAGGACAATTGACCCAATGAAAGCTGTTGGAAAGCCCCATACTCTGTGGGTGGCTTTTGCAAAGCTATATGAGACTTACAAAGATCTTCCAAACGCTCGTGTCATTTTTGATAAAGCTGTCCAAGTTAATTACAAGACTGTTGATCACCTGGCAAGTGTATGGGCTGAGTGGGCAGAGATGGAATTAAGACACAAAAATTTCAAGGGTGCTCTTGAGCTGATGAGACGAGCCACAGCTGAGCCTTCTGTTGAGGTCAAACGAAGAGTGGCTGCTGATGGGAATGAACCTGTTCAGATGAAGCTTCATAAATCCTTGAGGCTCTGGACATTCTATGTAGACTTGGAAGAAAGCTTGGGTACTTTGGAGTCAACACGTGCAGTCTATGAGAGAATACTGGATCTAAGAATTGCTACACCACAAATTATTATAAACTATGCATTTTTGTTAGAGGAGAACAAATATTTTGAAGATGCTTTCAAAGTTTATGAAAGAGGTGTCAAGATATTTAAGTATCCGCATGTGAAGGATATATGGGTTACTTATCTGTCAAAGTTTGTGAAGAGATATGGGAAGACGAAACTGGAACGGGCAAGGGAGCTGTTTGAGCATGCTGTTGAAACGGCTCCTGCAGATGCAGTAAAACCCCTGTATCTTCAATATGCAAAGCTGGAGGAGGAATATGGGCTAGCAAAGCGTGCTATGAAGGTCTATGATCAAGCAACTAAAGCTGTTCCAAATCATGAAAAACTTGGCATGTATGAGATTTACATTGCGCGTGCAGCTGAGATCTTTGGTGTTCCAAAAACAAGAGAAATTTATGAACAGGCAATAGAGTCTGGTCTTCCGGATAAAGATGTGAAGACAATGTGTTTGAAATATGCAGAGTTAGAAAAGAGCCTAGGAGAAATTGATCGTGCTCGTGCAATATATGTATTTGCTTCTCAATTTGCAGACCCACGCTCCGGTGCTGAATTTTGGGATAAATGGAGCGAGTTTGAGGTGCAACATGGTAATGAAGATACCTTCAGAGAAATGTTGCGGATCAAACGGAGTGTTACTGCTAGTTATAGCCAGACACATTTCATTCTCCCAGAGTATCTGATGCAGAAGGATCAGAATATGGATGATGCTAAAGACAAATTAAAACAGGCAGGTATCACCGAGGATGAGATGGCTGCTCTCGAGAGGCAGTTGTTACCTGCAGCTAATAATGCTACTCCTAAAGATAGCGCTAGAAAAGTAGGCTTTGTGAGTGCTGGAGTGGAGTCACAGGCTGATGGAGGGACGAAAACAACAGCGAATCTTGAAGATATTGAGTTGCCAGAAGAAAGTGACTCCGAAGATGAAAGAGTTGAAATTGCACAAAAGGATGTTCCATCTGCTGTGTTTGGAGGTCTTGCTCGAAAGAGGGAAGACAGAGATGACAATGAGGATGGAGATGATGATTCAGCTGCCAAGGACAAGGATGGTAAGGGCCGTCTGGGTGCGCTTGATCGCTTTAAAAGACAGAAGCAGGGTTAA
Protein:  
MSLPKELYPSQDDLLYEEELLRNPFSLKLWWRYLIARSEAPFKKRFIIYERALKALPGSYKLWHAYLRERLEIVRNLPVTHPQYETLNNTFERALVTMHKMPRIWIMYLTTLTEQKLITKTRRTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPSHIEDFIEFLLNSSLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEVSGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMATVVTVRDFSVIFDAYSQFEESMVAIKMESLDLSDEEENDGVEEDEDEEDIRLDIRLCKSKSKFEKKIFKGFWLHDENDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTIDPMKAVGKPHTLWVAFAKLYETYKDLPNARVIFDKAVQVNYKTVDHLASVWAEWAEMELRHKNFKGALELMRRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGTLESTRAVYERILDLRIATPQIIINYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFEHAVETAPADAVKPLYLQYAKLEEEYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELEKSLGEIDRARAIYVFASQFADPRSGAEFWDKWSEFEVQHGNEDTFREMLRIKRSVTASYSQTHFILPEYLMQKDQNMDDAKDKLKQAGITEDEMAALERQLLPAANNATPKDSARKVGFVSAGVESQADGGTKTTANLEDIELPEESDSEDERVEIAQKDVPSAVFGGLARKREDRDDNEDGDDDSAAKDKDGKGRLGALDRFKRQKQG